Task-oriented integrated use of biological web data sources

Mustafa Kirac; Ali Cakmak; Gultekin Ozsoyoglu

doi:10.1109/SSDBM.2006.49

Task-oriented integrated use of biological web data sources

Mustafa Kirac^*
, Ali Cakmak
, Gultekin Ozsoyoglu

^*Corresponding author for this work

Case Western Reserve University

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Citation (Scopus)

Abstract

Biological web data sources have now become essential information sources for researchers. However, their use is tedious, labor-intensive, repetitive, and possibly involve the integration of data from multiple web data sources. In this paper, as a first step towards the full integration of web data sources, we propose a framework that allows an integrated use of biological sources in a task-oriented manner. We define and experimentally evaluate a toolkit-based framework for semi-automatically constructing an integrated (software) system that automates and optimizes the execution of a biology-related computational task at hand To test and refine the principles of the framework, we build and evaluate "Pathway-Infer" as a benchmark integrated system.

Original language	English
Title of host publication	Proceedings - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006
Publisher	IEEE Computer Society
Pages	81-90
Number of pages	10
ISBN (Print)	0769525903, 9780769525907
DOIs	https://doi.org/10.1109/SSDBM.2006.49
Publication status	Published - 2006
Externally published	Yes
Event	18th International Conference on Scientific and Statistical Database Management, SSDBM 2006 - Vienna, Australia Duration: 3 Jul 2006 → 5 Jul 2006

Publication series

Name	Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM
ISSN (Print)	1099-3371

Conference

Conference	18th International Conference on Scientific and Statistical Database Management, SSDBM 2006
Country/Territory	Australia
City	Vienna
Period	3/07/06 → 5/07/06

Access to Document

10.1109/SSDBM.2006.49

Cite this

Kirac, M., Cakmak, A., & Ozsoyoglu, G. (2006). Task-oriented integrated use of biological web data sources. In Proceedings - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006 (pp. 81-90). Article 1644300 (Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM). IEEE Computer Society. https://doi.org/10.1109/SSDBM.2006.49

@inproceedings{ca012ccc5c1e4eaf9d79d30bf7eff3ad,

title = "Task-oriented integrated use of biological web data sources",

abstract = "Biological web data sources have now become essential information sources for researchers. However, their use is tedious, labor-intensive, repetitive, and possibly involve the integration of data from multiple web data sources. In this paper, as a first step towards the full integration of web data sources, we propose a framework that allows an integrated use of biological sources in a task-oriented manner. We define and experimentally evaluate a toolkit-based framework for semi-automatically constructing an integrated (software) system that automates and optimizes the execution of a biology-related computational task at hand To test and refine the principles of the framework, we build and evaluate {"}Pathway-Infer{"} as a benchmark integrated system.",

author = "Mustafa Kirac and Ali Cakmak and Gultekin Ozsoyoglu",

year = "2006",

doi = "10.1109/SSDBM.2006.49",

language = "English",

isbn = "0769525903",

series = "Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM",

publisher = "IEEE Computer Society",

pages = "81--90",

booktitle = "Proceedings - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006",

address = "United States",

note = "18th International Conference on Scientific and Statistical Database Management, SSDBM 2006 ; Conference date: 03-07-2006 Through 05-07-2006",

}

Kirac, M, Cakmak, A & Ozsoyoglu, G 2006, Task-oriented integrated use of biological web data sources. in Proceedings - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006., 1644300, Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM, IEEE Computer Society, pp. 81-90, 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006, Vienna, Australia, 3/07/06. https://doi.org/10.1109/SSDBM.2006.49

Task-oriented integrated use of biological web data sources. / Kirac, Mustafa; Cakmak, Ali; Ozsoyoglu, Gultekin.
Proceedings - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006. IEEE Computer Society, 2006. p. 81-90 1644300 (Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Task-oriented integrated use of biological web data sources

AU - Kirac, Mustafa

AU - Cakmak, Ali

AU - Ozsoyoglu, Gultekin

PY - 2006

Y1 - 2006

N2 - Biological web data sources have now become essential information sources for researchers. However, their use is tedious, labor-intensive, repetitive, and possibly involve the integration of data from multiple web data sources. In this paper, as a first step towards the full integration of web data sources, we propose a framework that allows an integrated use of biological sources in a task-oriented manner. We define and experimentally evaluate a toolkit-based framework for semi-automatically constructing an integrated (software) system that automates and optimizes the execution of a biology-related computational task at hand To test and refine the principles of the framework, we build and evaluate "Pathway-Infer" as a benchmark integrated system.

AB - Biological web data sources have now become essential information sources for researchers. However, their use is tedious, labor-intensive, repetitive, and possibly involve the integration of data from multiple web data sources. In this paper, as a first step towards the full integration of web data sources, we propose a framework that allows an integrated use of biological sources in a task-oriented manner. We define and experimentally evaluate a toolkit-based framework for semi-automatically constructing an integrated (software) system that automates and optimizes the execution of a biology-related computational task at hand To test and refine the principles of the framework, we build and evaluate "Pathway-Infer" as a benchmark integrated system.

UR - https://www.scopus.com/pages/publications/45149086650

U2 - 10.1109/SSDBM.2006.49

DO - 10.1109/SSDBM.2006.49

M3 - Conference contribution

AN - SCOPUS:45149086650

SN - 0769525903

SN - 9780769525907

T3 - Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM

SP - 81

EP - 90

BT - Proceedings - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006

PB - IEEE Computer Society

T2 - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006

Y2 - 3 July 2006 through 5 July 2006

ER -

Kirac M, Cakmak A, Ozsoyoglu G. Task-oriented integrated use of biological web data sources. In Proceedings - 18th International Conference on Scientific and Statistical Database Management, SSDBM 2006. IEEE Computer Society. 2006. p. 81-90. 1644300. (Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM). doi: 10.1109/SSDBM.2006.49

Task-oriented integrated use of biological web data sources

Abstract

Publication series

Conference

Access to Document

Other files and links

Fingerprint

Cite this