Symmetry-adapted perturbation theory potential for the adenine dimer

Armaǧan Karatosun, Mehmet Çankaya, Adem Tekin*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

6 Citations (Scopus)

Abstract

A new intermolecular interaction potential for the adenine dimer has been developed with the help of a combination of symmetry-adapted perturbation theory and density functional theory (DFT-SAPT). Supermolecular intermolecular interaction energy computations on hydrogen-bonded and stacked adenine dimers at B3LYP-D, MP2, SCS-MP2, SCS-MI-MP2 and CCSD(T) levels showed that DFT-SAPT is in a very good agreement with CCSD(T). The developed ab initio intermolecular potential has been used to predict the cluster structure of adenine dimers, trimers and tetramers. These global cluster optimizations reproduced adenine dimers reported in the literature and moreover new low-energy structures were also located. For trimers and tetramers, new hydrogen-bonded and stacked low-energy structures have also been found. The current findings suggest that the new ab initio potential can further be exploited to reveal the structure and energy of much larger supramolecular adenine clusters.

Original languageEnglish
Pages (from-to)26303-26314
Number of pages12
JournalPhysical Chemistry Chemical Physics
Volume20
Issue number41
DOIs
Publication statusPublished - 2018

Bibliographical note

Publisher Copyright:
© 2018 the Owner Societies.

Funding

This work was financially supported by the Scientific and Technological Research Council of Turkey (TÜBİTAK-114Z529). Computing resources are provided by the National Center for High Performance Computing of Turkey (UHEM), under the Grant Number 1002132012, TÜBİTAK ULAKBİM, High Performance and Grid Computing Center (TRUBA resources) and Informatics Institute of İstanbul Technical University.

FundersFunder number
Türkiye Bilimsel ve Teknolojik Araştirma Kurumu1002132012, TÜBİTAK-114Z529

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