Supervised Classification of White Matter Fibers Based on Neighborhood Fiber Orientation Distributions Using an Ensemble of Neural Networks

Devran Ugurlu, Zeynep Firat, Ugur Ture, Gozde Unal*

*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

3 Citations (Scopus)

Abstract

White matter fibers constitute the main information transfer network of the brain and their accurate digital representation and classification is an important goal of neuroscience image computing. In current clinical practice, the reconstruction of desired fibers generally involves manual selection of regions of interest by an expert, which is time-consuming and subject to user bias, expertise and fatigue. Hence, automation of the process is desired. To that end, we propose a supervised classification approach that utilizes an ensemble of neural networks. Each streamline is represented by the fiber orientation distributions in its neighborhood, while the resolved fiber orientations are obtained by generalized q-sampling imaging (GQI) and a subsequent diffusion decomposition method. In order to make the supervised fiber classification succeed in a real scenario where a substantial portion of reconstructed fiber tracts contain spurious fibers, we present a way to create an “invalid” class label through a dedicated training set creation scheme with an ensemble of networks. The performance of the proposed classification method is demonstrated on major fiber pathways in the brainstem. 30 subjects from Human Connectome Project (HCP)’s publicly available “WU-Minn 500 Subjects + MEG2 dataset” are used as the dataset.

Original languageEnglish
Title of host publicationMathematics and Visualization
EditorsElisenda Bonet-Carne, Francesco Grussu, Lipeng Ning, Farshid Sepehrband, Chantal M.W. Tax
PublisherSpringer Heidelberg
Pages143-154
Number of pages12
ISBN (Print)9783030058302
DOIs
Publication statusPublished - 2019
Externally publishedYes
EventInternational Workshop on Computational Diffusion MRI, CDMRI 2018 held with International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018 - Granada, Spain
Duration: 20 Sept 201820 Sept 2018

Publication series

NameMathematics and Visualization
ISSN (Print)1612-3786
ISSN (Electronic)2197-666X

Conference

ConferenceInternational Workshop on Computational Diffusion MRI, CDMRI 2018 held with International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2018
Country/TerritorySpain
CityGranada
Period20/09/1820/09/18

Bibliographical note

Publisher Copyright:
© 2019, Springer Nature Switzerland AG.

Keywords

  • Brain fiber pathways
  • Ensemble neural networks
  • Supervised white matter fiber classification

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