Current status of multiscale simulations on GPCRs

Serdar Durdagi, Berna Dogan, Ismail Erol, Gülru Kayık, Busecan Aksoydan

Research output: Contribution to journalReview articlepeer-review

14 Citations (Scopus)

Abstract

Membrane receptors couple signaling pathways using various mechanisms. G Protein-Coupled Receptors (GPCRs) represent the largest class of membrane proteins involved in signal transduction across the biological membranes. They are essential targets for cell signaling and are of great commercial interest to the pharmaceutical industry. Recent advances made in molecular biology and computational chemistry offer a range of simulation and multiscale modeling tools for the definition and analysis of protein–ligand, protein–protein, and protein–membrane interactions. The development of new techniques on statistical methods and free energy simulations help to predict novel optimal ligands, G protein specificity and oligomerization. The identification of the ligand-binding activation mechanisms and atomistic determinants as well as the interactions of intracellular binding partners that bind to GPCR targets in different coupling states will provide greater safety in human life. In this review, recent approaches and applications of multiscale simulations on GPCRs were highlighted.

Original languageEnglish
Pages (from-to)93-103
Number of pages11
JournalCurrent Opinion in Structural Biology
Volume55
DOIs
Publication statusPublished - Apr 2019
Externally publishedYes

Bibliographical note

Publisher Copyright:
© 2019 Elsevier Ltd

Funding

Authors thanks TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA). SD thanks The Scientific and Technological Research Council of Turkey (TUBITAK) for the support of part of this study (Project No: 214Z122).

FundersFunder number
TUBITAK214Z122
Türkiye Bilimsel ve Teknolojik Araştirma Kurumu

    Fingerprint

    Dive into the research topics of 'Current status of multiscale simulations on GPCRs'. Together they form a unique fingerprint.

    Cite this