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Az örnekli öǧrenme ile mikroskobik görüntülerden maya hücresi segmentasyonu

Translated title of the contribution: Few-shot learning for segmentation of yeast cell microscopy images
  • Fatih Sultan Mehmet Vakif Universitesi
  • Optofil Optik ve Elektronik Tasarım A.Ş.
  • Bilgisayar Mühendisliǧi Bölümü
  • Koc University

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Abstract

Cell segmentation from microscopic images can be performed using deep neural networks or image processing techniques. In addition to their inherent difficulties, these techniques come together with the requirement of feeding the neural network with a large number of image samples in order to obtain a good result. However, this is not sustainable in terms of collecting and labeling microscopic images and represents a costly and timeconsuming solution for every new microscopic image and cell type. Instead, fine-tuning can be employed by taking advantage of the adaptation ability of a model trained using meta-learning algorithms. In this way, while more general and better results can be obtained with fewer samples, the training process does not start from scratch for each new cell type or data set. In this article, microscopic images of yeast cells were recorded and analyzed using Reptile algorithm. After fine-tuning with a small number of samples, an average success rate of 81% IoU (Intersection over Union) was obtained on the test pictures in addition to the model accuracy reaching up to 87%.

Translated title of the contributionFew-shot learning for segmentation of yeast cell microscopy images
Original languageTurkish
Title of host publicationSIU 2021 - 29th IEEE Conference on Signal Processing and Communications Applications, Proceedings
PublisherInstitute of Electrical and Electronics Engineers Inc.
ISBN (Electronic)9781665436496
DOIs
Publication statusPublished - 9 Jun 2021
Externally publishedYes
Event29th IEEE Conference on Signal Processing and Communications Applications, SIU 2021 - Virtual, Istanbul, Turkey
Duration: 9 Jun 2021 → 11 Jun 2021

Publication series

NameSIU 2021 - 29th IEEE Conference on Signal Processing and Communications Applications, Proceedings

Conference

Conference29th IEEE Conference on Signal Processing and Communications Applications, SIU 2021
Country/TerritoryTurkey
CityVirtual, Istanbul
Period9/06/21 → 11/06/21

Bibliographical note

Publisher Copyright:
© 2021 IEEE.

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