Artefact detection in video endoscopy using retinanet and focal loss function

Ilkay Oksuz, James R. Clough, Andrew P. King, Julia A. Schnabel

Research output: Contribution to journalConference articlepeer-review

6 Citations (Scopus)

Abstract

Endoscopic Artefact Detection (EAD) is a fundamental task for enabling the use of endoscopy images for diagnosis and treatment of diseases in multiple organs. Precise detection of specific artefacts such as pixel saturations, motion blur, specular reflections, bubbles and instruments is essential for high-quality frame restoration. This work describes our submission to the EAD 2019 challenge to detect bounding boxes for seven classes of artefacts in endoscopy videos. Our method is based on focal loss and Retina-net architecture with Resnet-152 backbone. We have generated a large derivative dataset by augmenting the original images with free-form deformations to prevent over-fitting. Our method reaches a mAP of 0.2719 and a IoU of 0.3456 for the detection task over all classes of artefact for 195 images. We report comparable performance for the generalization dataset reaching a mAP of 0.2974 and deviation from the detection dataset of 0.0859.

Original languageEnglish
JournalCEUR Workshop Proceedings
Volume2366
Publication statusPublished - 2019
Externally publishedYes
Event2019 Challenge on Endoscopy Artefacts Detection: Multi-Class Artefact Detection in Video Endoscopy, EAD 2019 - Venice, Italy
Duration: 8 Apr 2019 → …

Bibliographical note

Publisher Copyright:
© 2019 CEUR-WS. All rights reserved.

Funding

This work was supported by an EPSRC programme Grant (EP/P001009/1) and the Wellcome EPSRC Centre for Medical Engineering at School of Biomedical Engineering and Imaging Sciences, Kings College London (WT 203148/Z/16/Z). We acknowledge financial support from the Department of Health via the NIHR comprehensive Biomedical Research Centre award to Guys & St Thomas NHS Foundation Trust with KCL and Kings College Hospital NHS Foundation Trust. ∗ Joint last authors.

FundersFunder number
Wellcome EPSRC Centre for Medical Engineering at School of Biomedical Engineering and Imaging Sciences, Kings College LondonWT 203148/Z/16/Z
King's College Hospital NHS Foundation Trust
NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research
Engineering and Physical Sciences Research CouncilEP/P001009/1
National Institute for Health Research
Department of Health and Social Care

    Keywords

    • Class imbalance
    • Focal loss
    • Retina-net
    • Terms— endoscopic artefact detection

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