Research output per year
Research output per year
- 1 - 50 out of 199 results
Search results
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2024
Bag-1-mediated HSF1 phosphorylation regulates expression of heat shock proteins in breast cancer cells
Kizilboga, T., Özden, C., Can, N. D., Onay Ucar, E. & Dinler Doganay, G., 2024, (Accepted/In press) In: FEBS Open Bio.Research output: Contribution to journal › Article › peer-review
Open Access -
Carbamazepine Adsorption onto Giant Macroporous Silica and Adaptive Neuro-Fuzzy Inference System Modeling
Alver, A., Yılmaz, B. A., Bilican, B. K., Baştürk, E., Kaya, M. & Işık, M., Jun 2024, In: Arabian Journal for Science and Engineering. 49, 6, p. 8509-8524 16 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Evolutionary engineering and molecular characterization of cobalt-resistant Rhodobacter sphaeroides
Atay, G., Holyavkin, C., Can, H., Arslan, M., Topaloğlu, A., Trotta, M. & Çakar, Z. P., 2024, In: Frontiers in Microbiology. 15, 1412294.Research output: Contribution to journal › Article › peer-review
Open Access -
Locally released dexamethasone and its effects on osteogenic activity at implant-tissue interface
Kerem, G., Önder, S. & Kılıç, A., Oct 2024, In: Journal of Biomedical Materials Research - Part A. 112, 10, p. 1793-1802 10 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Revealing the role of the X25 domains through the characterization of truncated variants of amylopullulanase enzyme from Thermoanaerobacter brockii brockii
Kayrav, A., Mumcu, H., Durmus, N. & Karaguler, N. G., Jun 2024, In: International Journal of Biological Macromolecules. 270, 132404.Research output: Contribution to journal › Article › peer-review
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Shelf life of cocktail tomato extended with chitosan, chia mucilage and levan
Ali, Q., Kurubas, M. S., Mujtaba, M., Nazari, A. W., Dogan, A., Kaya, M., Oner, E. T., Yilmaz, B. A. & Erkan, M., 1 Jan 2024, In: Scientia Horticulturae. 323, 112500.Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus) -
2023
A two-step purification platform for efficient removal of Fab-related impurities: A case study for Ranibizumab
Tatli, O., Oz, Y., Dingiloglu, B., Yalcinkaya, D., Basturk, E., Korkmaz, M., Akbulut, L., Hatipoglu, D., Kirmacoglu, C., Akgun, B., Turk, K., Pinar, O., Sariyar Akbulut, B., Atabay, Z., Tahir Turanli, E., Kazan, D. & Dinler Doganay, G., Nov 2023, In: Heliyon. 9, 11, e21001.Research output: Contribution to journal › Article › peer-review
Open Access -
Cloning and characterization of thermostable amylopullulanase TbbApu and its C-terminal truncated variants with enhanced activity in organic solvents
Mumcu, H., Kayrav, A., İsleyen, N. D. & Karaguler, N. G., Mar 2023, In: Enzyme and Microbial Technology. 164, 110176.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Combinatorial decolorization performance of Pycnoporus sanguineus MUCL 38531 sourced recombinant laccase/mediator systems on toxic textile dyes
Malcı, K., Kurt-Gür, G., Tamerler, C. & Yazgan-Karatas, A., Jan 2023, In: International Journal of Environmental Science and Technology. 20, 1, p. 951-966 16 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets
Tezcan, E. F., Demirtas, Y., Cakar, Z. P. & Ulgen, K. O., 2023, In: Frontiers in Bioinformatics. 3, 1121409.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Conversion of Helix 1 into a Loop in Prion Protein Misfolding
Tavşanlı, A. & Balta, B., 21 Feb 2023, In: ACS Omega. 8, 7, p. 7191-7200 10 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
Atalay, N., Akcan, E. K., Gül, M., Ayan, E., Destan, E., Ertem, F. B., Tokay, N., Çakilkaya, B., Nergiz, Z., Karakadioğlu, G., Kepceoğlu, A., Yapici, İ., Tosun, B., Baldir, N., Yildirim, G., Johnson, J. A., Güven, Ö., Shafiei, A., Arslan, N. E. & Yilmaz, M. & 27 others, , 2023, In: Turkish Journal of Biology. 47, 1Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Development of an ID-LC–MS/MS method using targeted proteomics for quantifying cardiac troponin I in human serum
Asicioglu, M., Oztug, M. & Karaguler, N. G., Dec 2023, In: Clinical Proteomics. 20, 1, 40.Research output: Contribution to journal › Article › peer-review
Open Access -
Development of a nucleic acid-based lateral flow device as a reliable diagnostic tool for respiratory viral infections
Akalın, P. & Yazgan-Karataş, A., Dec 2023, In: MethodsX. 11, 102372.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Duality of Valproic Acid Effects on Inflammation, Oxidative Stress and Autophagy in Human Eosinophilic Cells
Uzel, G., Oylumlu, E., Durmus, L. & Ciraci, C., Sept 2023, In: International Journal of Molecular Sciences. 24, 17, 13446.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Food-Grade Physically Unclonable Functions
Esidir, A., Kayaci, N., Kiremitler, N. B., Kalay, M., Sahin, F., Sezer, G., Kaya, M. & Onses, M. S., 6 Sept 2023, In: ACS applied materials & interfaces. 15, 35, p. 41373-41384 12 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
Formation and Effects of Upstream DNA–RNA Base Pairing in Telomerase
Özmaldar, A. & Balta, B., 14 Dec 2023, In: ChemBioChem. 24, 24, e202300501.Research output: Contribution to journal › Article › peer-review
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Genetically Encoded Fluorescent Probe for Detection of Heme-Induced Conformational Changes in Cytochrome c
Genceroglu, M. Y., Cavdar, C., Manioglu, S. & Bayraktar, H., Sept 2023, In: Biosensors. 13, 9, 890.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Genomic, transcriptomic, and metabolic characterization of 2-Phenylethanol-resistant Saccharomyces cerevisiae obtained by evolutionary engineering
Holyavkin, C., Turanlı-Yıldız, B., Yılmaz, Ü., Alkım, C., Arslan, M., Topaloğlu, A., Kısakesen, H. İ., de Billerbeck, G., François, J. M. & Çakar, Z. P., 2023, In: Frontiers in Microbiology. 14, 1148065.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus) -
Identification of phenotypic and genotypic properties and cold adaptive mechanisms of novel freeze–thaw stress-resistant strain Pseudomonas mandelii from Antarctica
Mumcu, H., Sarac Cebeci, E. T., Menekse Kılıc, M., Cebeci, A., Gunes, Y., Karacan, I., Oztug, M., Balci, N. & Gul Karaguler, N., Mar 2023, In: Polar Biology. 46, 3, p. 169-183 15 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
IgE Immune Complexes Mitigate Eosinophilic Immune Responses through NLRC4 Inflammasome
Oylumlu, E., Uzel, G., Durmus, L. & Ciraci, C., 2023, In: Mediators of Inflammation. 2023, 3224708.Research output: Contribution to journal › Article › peer-review
Open Access -
Improvement of Bacilysin Production in Bacillus subtilis by CRISPR/Cas9-Mediated Editing of the 5'-Untranslated Region of the bac Operon
Abdulmalek, H. W. & Yazgan-Karataş, A., Mar 2023, In: Journal of Microbiology and Biotechnology. 33, 3, p. 410-418 9 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
In Silico Comparative Expression Analyses of Pattern Recognition Receptors in Human Eosinophil Cell Lines and Primary Eosinophils
Celik, Z., Barutcu, E., Ozcelebi, Y., Sarac, E. Y. & Ciraci, C., 2023, In: Turkish Journal of Immunology. 11, 3, p. 106-116 11 p.Research output: Contribution to journal › Article › peer-review
Open Access -
miR96- and miR182-driven regulation of cytoskeleton results in inhibition of glioblastoma motility
Akdaş, E. Y., Temizci, B. & Karabay, A., 1 Sept 2023, In: Cytoskeleton. 80, 9-10, p. 367-381 15 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Monitoring Cell Adhesion on Polycaprolactone-Chitosan Films with Varying Blend Ratios by Quartz Crystal Microbalance with Dissipation
Özdabak Sert, A. B., Bittrich, E., Uhlmann, P., Kok, F. N. & Kılıç, A., 16 May 2023, In: ACS Omega. 8, 19, p. 17017-17027 11 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Preparation of Bacterial Cellulose Using Enzymatic Hydrolysate of Olive Pomace as Carbon Source
Sagdic-Oztan, C., Koschella, A., Heinze, T., Karaguler, N. G. & Tuter, M., 2023, In: BioResources. 18, 2, p. 4168-4181 14 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Spastin Promotes the Migration and Invasion Capability of T98G Glioblastoma Cells by Interacting with Pin1 through Its Microtubule-Binding Domain
Temizci, B., Kucukvardar, S. & Karabay, A., Feb 2023, In: Cells. 12, 3, 427.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
2022
Adaptive tracking algorithm for trajectory analysis of cells and layer-by-layer assessment of motility dynamics
Qureshi, M. H., Ozlu, N. & Bayraktar, H., Nov 2022, In: Computers in Biology and Medicine. 150, 106193.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Altered kidney function induced by SARS-CoV-2 infection and acute kidney damage markers predict survival outcomes of COVID-19 patients: a prospective pilot study
Temiz, M. Z., Hacibey, I., Yazar, R. O., Sevdi, M. S., Kucuk, S. H., Alkurt, G., Doganay, L., Dinler Doganay, G., Dincer, M. M., Yuruk, E., Erkalp, K. & Muslumanoglu, A. Y., 2022, In: Renal Failure. 44, 1, p. 233-240 8 p.Research output: Contribution to journal › Article › peer-review
Open Access12 Citations (Scopus) -
Cloning, Expression, and Characterization of Serine Protease AprX from Geobacillus thermoleovorans ARTRW1
Oztug, M., Durer, Z. A. O., Yetke, H. I., Asicioglu, M., Akgoz, M. & Karaguler, N. G., 1 Jun 2022, In: Industrial Biotechnology. 18, 3, p. 176-187 12 p.Research output: Contribution to journal › Article › peer-review
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Computational Modeling of T Cell Hypersensitivity during Coronavirus Infections Leading to Autoimmunity and Lethality
Celebi, A. T., Uzel, G., Oylumlu, E., Baykasoglu, C., Mugan, A., Joly, S. & Ciraci, C., 2022, In: Computational and Mathematical Methods in Medicine. 2022, 9444502.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
COVID-19 PCR test performance on samples stored at ambient temperature
Agaoglu, N. B., Yildiz, J., Akgun Dogan, O., Kose, B., Alkurt, G., Kendir Demirkol, Y., Irvem, A., Doganay, L. & Dinler Doganay, G., Mar 2022, In: Journal of Virological Methods. 301, 114404.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
CRISPR/Cas9-mediated Bag-1 knockout increased mesenchymal characteristics of MCF-7 cells via Akt hyperactivation-mediated actin cytoskeleton remodeling
Kilbas, P. O., Can, N. D., Kizilboga, T., Ezberci, F., Doganay, H. L., Arisan, E. D. & Doganay, G. D., Jan 2022, In: PLoS ONE. 17, 1 January, e0261062.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Determining the accuracy of next generation sequencing based copy number variation analysis in Hereditary Breast and Ovarian Cancer
Agaoglu, N. B., Unal, B., Akgun Dogan, O., Zolfagharian, P., Sharifli, P., Karakurt, A., Can Senay, B., Kizilboga, T., Yildiz, J., Dinler Doganay, G. & Doganay, L., 2022, In: Expert Review of Molecular Diagnostics. 22, 2, p. 239-246 8 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Draft Genome Sequence of Virgibacillus sp. Strain AGTR, Isolated from Hypersaline Lake Acigöl in Turkey
Kilic, M. M., Balci, N. & Karaguler, N. G., Oct 2022, In: Microbiology Resource Announcements. 11, 10Research output: Contribution to journal › Article › peer-review
Open Access -
Macroporous Surgical Mesh from a Natural Cocoon Composite
Chen, Y. M., Zang, L. S., Koc-Bilican, B., Bilican, I., Holland, C., Cansaran-Duman, D., Karaduman, T., Çolak, A., Bayır, Y., Halici, Z., Ozmen, S., Ali, A., Labidi, J., Elbuken, C. & Kaya, M., 9 May 2022, In: ACS Sustainable Chemistry and Engineering. 10, 18, p. 5728-5738 11 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Modeling gain-of-function and loss-of-function components of SPAST-based hereditary spastic paraplegia using transgenic mice
Piermarini, E., Akarsu, S., Connors, T., Kneussel, M., Lane, M. A., Morfini, G., Karabay, A., Baas, P. W. & Qiang, L., 1 Jun 2022, In: Human Molecular Genetics. 31, 11, p. 1844-1859 16 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
MYO1H is a novel candidate gene for autosomal dominant pure hereditary spastic paraplegia
Selçuk, E., Kırımtay, K., Temizci, B., Akarsu, Ş., Everest, E., Baslo, M. B., Demirkıran, M., Yapıcı, Z. & Karabay, A., Jul 2022, In: Molecular Genetics and Genomics. 297, 4, p. 1141-1150 10 p.Research output: Contribution to journal › Article › peer-review
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NFI transcriptionally represses CDON and is required for SH-SY5Y cell survival
Uluca, B., Lektemur Esen, C., Saritas Erdogan, S. & Kumbasar, A., Feb 2022, In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1865, 2, 194798.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Pectin–Zeolite-Based Wound Dressings with Controlled Albumin Release
Kocaaga, B., Kurkcuoglu, O., Tatlier, M., Dinler-Doganay, G., Batirel, S. & Güner, F. S., 1 Feb 2022, In: Polymers. 14, 3, 460.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
Physiological and Molecular Characterization of an Oxidative Stress-Resistant Saccharomyces cerevisiae Strain Obtained by Evolutionary Engineering
Kocaefe-Özşen, N., Yilmaz, B., Alkım, C., Arslan, M., Topaloğlu, A., Kısakesen, H. L., Gülsev, E. & Çakar, Z. P., 24 Feb 2022, In: Frontiers in Microbiology. 13, 822864.Research output: Contribution to journal › Article › peer-review
Open Access21 Citations (Scopus) -
Pullulan hydrogel-immobilized bacterial cellulose membranes with dual-release of vitamin C and E for wound dressing applications
Atila, D., Karataş, A., Keskin, D. & Tezcaner, A., 1 Oct 2022, In: International Journal of Biological Macromolecules. 218, p. 760-774 15 p.Research output: Contribution to journal › Article › peer-review
24 Citations (Scopus) -
Structure-based engineering of an antiangiogenic scFv antibody for soluble production in E. coli without loss of activity
Denizci Öncü, M., Balcıoğlu, B. K., Özgür, B., Öztürk, H. Ü., Serhatlı, M., Işık, Ş., Erdağ, B., Dinler Doğanay, G. & Özdemir Bahadır, A., Oct 2022, In: Biotechnology and Applied Biochemistry. 69, 5, p. 2122-2137 16 p.Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
The comparison of differentially expressed microRNAs in Bag-1 deficient and wild type MCF-7 breast cancer cells by small RNA sequencing
Özfiliz Kilbaş, P., Alkurt, G., Obakan Yerlikaya, P., Çoker Gürkan, A., Dinler Doğanay, G. & Arisan, E. D., 2022, In: Turkish Journal of Biology. 46, 2, p. 118-136 19 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Understanding the adaptive laboratory evolution of multiple stress-resistant yeast strains by genome-scale modeling
Çetin, H., Çakar, Z. P. & Ülgen, K. O., Aug 2022, In: Yeast. 39, 8, p. 449-465 17 p.Research output: Contribution to journal › Article › peer-review
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2021
A functional coating to enhance antibacterial and bioactivity properties of titanium implants and its performance in vitro
Doymus, B., Kerem, G., Yazgan Karatas, A., Kok, F. N. & Önder, S., Jan 2021, In: Journal of Biomaterials Applications. 35, 6, p. 655-669 15 p.Research output: Contribution to journal › Article › peer-review
9 Citations (Scopus) -
Analysis of university student responses to the pandemic in a formal microbiology assessment
Ç akar, Z. P., Redfern, J. & Verran, J., 1 Jul 2021, In: FEMS Microbiology Letters. 368, 14, fnab091.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Characteristics of silver-containing titanium-based coating after thermal oxidation
Cetiner, D., Karaguler, N. G., Cimenoglu, H. & Atar, E., 3 Sept 2021, In: Surface Innovations. 10, 2, p. 140-149 10 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
Co-chaperone bag-1 plays a role in the autophagy-dependent cell survival through beclin 1 interaction
Turk, M., Tatli, O., Alkan, H. F., Kilbas, P. O., Alkurt, G. & Doganay, G. D., 2 Feb 2021, In: Molecules. 26, 4, 854.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Scopus) -
Combined Metabolic Activators Accelerates Recovery in Mild-to-Moderate COVID-19
Altay, O., Arif, M., Li, X., Yang, H., Aydın, M., Alkurt, G., Kim, W., Akyol, D., Zhang, C., Dinler-Doganay, G., Turkez, H., Shoaie, S., Nielsen, J., Borén, J., Olmuscelik, O., Doganay, L., Uhlén, M. & Mardinoglu, A., 8 Sept 2021, In: Advanced Science. 8, 17, 2101222.Research output: Contribution to journal › Article › peer-review
Open Access44 Citations (Scopus)